J4_7YLA_005

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7YLA|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7YLA_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0684

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7YLA|1|I|G|1310
7YLA|1|I|G|1311
7YLA|1|I|U|1312
7YLA|1|I|U|1313
7YLA|1|I|C|1314
*
7YLA|1|I|G|1338
7YLA|1|I|G|1339
7YLA|1|I|U|1340
7YLA|1|I|G|1341
7YLA|1|I|A|1342
7YLA|1|I|G|1343
*
7YLA|1|I|C|1404
7YLA|1|I|U|1405
*
7YLA|1|I|A|1597
7YLA|1|I|A|1598
7YLA|1|I|U|1599
7YLA|1|I|C|1600
7YLA|1|I|G|1601
7YLA|1|I|U|1602
7YLA|1|I|A|1603
7YLA|1|I|C|1604

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain b

50S ribosomal protein L23

Chain k

50S ribosomal protein L34