J4_7YLA_009

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7YLA|1|I|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7YLA_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1273

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7YLA|1|I|C|1833
7YLA|1|I|U|1834
7YLA|1|I|G|1835
*
7YLA|1|I|C|1905
7YLA|1|I|G|1906
*
7YLA|1|I|C|1924
7YLA|1|I|C|1925
7YLA|1|I|U|1926
7YLA|1|I|A|1927
7YLA|1|I|A|1928
7YLA|1|I|G|1929
7YLA|1|I|G|1930
7YLA|1|I|U|1931
7YLA|1|I|A|1932
7YLA|1|I|G|1933
*
7YLA|1|I|C|1967
7YLA|1|I|G|1968
7YLA|1|I|A|1969
7YLA|1|I|A|1970
7YLA|1|I|U|1971
7YLA|1|I|G|1972

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain 6

GTPase HflX

Chain K

50S ribosomal protein L2