J4_7ZHG_003
3D structure
- PDB id
- 7ZHG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loop
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.25 Å
Loop
- Sequence
- GCG*(4AC)GAAG*UGUAAAGGA(OMU)G*C(4AC)
- Length
- 21 nucleotides
- Bulged bases
- 7ZHG|1|2|C|542, 7ZHG|1|2|A|782
- QA status
- Modified nucleotides: 4AC, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZHG|1|2|G|541
7ZHG|1|2|C|542
7ZHG|1|2|G|543
*
7ZHG|1|2|4AC|731
7ZHG|1|2|G|732
7ZHG|1|2|A|733
7ZHG|1|2|A|734
7ZHG|1|2|G|735
*
7ZHG|1|2|U|778
7ZHG|1|2|G|779
7ZHG|1|2|U|780
7ZHG|1|2|A|781
7ZHG|1|2|A|782
7ZHG|1|2|A|783
7ZHG|1|2|G|784
7ZHG|1|2|G|785
7ZHG|1|2|A|786
7ZHG|1|2|OMU|787
7ZHG|1|2|G|788
*
7ZHG|1|2|C|850
7ZHG|1|2|4AC|851
Current chains
- Chain 2
- rRNA 16S
Nearby chains
- Chain 0
- 50S ribosomal protein L41e
- Chain I
- 30S ribosomal protein S8
- Chain M
- 30S ribosomal protein S11
- Chain N
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S15
- Chain R
- 30S ribosomal protein S17
Coloring options: