J4_7ZJX_003

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGGGAG*UGUCGCCG*CACGGGG

Length

24 nucleotides

Bulged bases

7ZJX|1|L5|G|859, 7ZJX|1|L5|C|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJX|1|L5|C|706
7ZJX|1|L5|C|707
*
7ZJX|1|L5|G|855
7ZJX|1|L5|A|856
7ZJX|1|L5|G|857
7ZJX|1|L5|G|858
7ZJX|1|L5|G|859
7ZJX|1|L5|A|860
7ZJX|1|L5|G|861
*
7ZJX|1|L5|U|871
7ZJX|1|L5|G|872
7ZJX|1|L5|U|873
7ZJX|1|L5|C|874
7ZJX|1|L5|G|875
7ZJX|1|L5|C|876
7ZJX|1|L5|C|877
7ZJX|1|L5|G|878
*
7ZJX|1|L5|C|1222
7ZJX|1|L5|A|1223
7ZJX|1|L5|C|1224
7ZJX|1|L5|G|1225
7ZJX|1|L5|G|1226
7ZJX|1|L5|G|1227
7ZJX|1|L5|G|1228

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4

Chain LH

60S ribosomal protein L6

Chain LI

60S ribosomal Protein uL30

Chain Lh

Ribosomal protein L32