J4_7ZJX_004

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GCCGG*CACGG*CGAGCG

Length

19 nucleotides

Bulged bases

7ZJX|1|L5|A|1124, 7ZJX|1|L5|G|1215, 7ZJX|1|L5|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJX|1|L5|C|883
7ZJX|1|L5|U|884
7ZJX|1|L5|C|885
*
7ZJX|1|L5|G|985
7ZJX|1|L5|C|986
7ZJX|1|L5|C|987
7ZJX|1|L5|G|988
7ZJX|1|L5|G|989
*
7ZJX|1|L5|C|1123
7ZJX|1|L5|A|1124
7ZJX|1|L5|C|1125
7ZJX|1|L5|G|1126
7ZJX|1|L5|G|1127
*
7ZJX|1|L5|C|1212
7ZJX|1|L5|G|1213
7ZJX|1|L5|A|1214
7ZJX|1|L5|G|1215
7ZJX|1|L5|C|1216
7ZJX|1|L5|G|1217

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4

Chain LH

60S ribosomal protein L6

Chain LI

60S ribosomal Protein uL30

Chain Le

60S ribosomal protein L29