J4_7ZJX_011

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7ZJX|1|L5|U|3550

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZJX_011 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.1004

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJX|1|L5|C|3428
7ZJX|1|L5|U|3429
7ZJX|1|L5|G|3430
*
7ZJX|1|L5|C|3484
7ZJX|1|L5|G|3485
*
7ZJX|1|L5|C|3503
7ZJX|1|L5|U|3504
7ZJX|1|L5|U|3505
7ZJX|1|L5|A|3506
7ZJX|1|L5|A|3507
7ZJX|1|L5|G|3508
7ZJX|1|L5|G|3509
7ZJX|1|L5|U|3510
7ZJX|1|L5|A|3511
7ZJX|1|L5|G|3512
*
7ZJX|1|L5|U|3546
7ZJX|1|L5|G|3547
7ZJX|1|L5|A|3548
7ZJX|1|L5|A|3549
7ZJX|1|L5|U|3550
7ZJX|1|L5|G|3551

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein uL2

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Sl

60S ribosomal protein L41