J4_7ZJX_012

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

7ZJX|1|L5|A|3980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJX|1|L5|C|3977
7ZJX|1|L5|U|3978
7ZJX|1|L5|A|3979
7ZJX|1|L5|A|3980
7ZJX|1|L5|G|3981
*
7ZJX|1|L5|U|4035
7ZJX|1|L5|U|4036
7ZJX|1|L5|G|4037
*
7ZJX|1|L5|C|4064
7ZJX|1|L5|C|4065
*
7ZJX|1|L5|G|4074
7ZJX|1|L5|G|4075
7ZJX|1|L5|G|4076

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

Ribosomal_L18_c domain-containing protein

Chain LW

60S ribosomal protein L21

Chain Lq

60S ribosomal protein eL42