J4_7ZJX_014

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUA(A2M)*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

7ZJX|1|L5|U|4423

QA status

Modified nucleotides: A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZJX_014 not in the Motif Atlas

Homologous match to J4_8GLP_013

Geometric discrepancy: 0.0634

The information below is about J4_8GLP_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69783.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7ZJX|1|L5|G|4333
7ZJX|1|L5|U|4334
7ZJX|1|L5|A|4335
7ZJX|1|L5|A2M|4336
*
7ZJX|1|L5|OMU|4366
7ZJX|1|L5|C|4367
*
7ZJX|1|L5|G|4422
7ZJX|1|L5|U|4423
7ZJX|1|L5|G|4424
*
7ZJX|1|L5|C|4458
7ZJX|1|L5|G|4459
7ZJX|1|L5|C|4460
7ZJX|1|L5|C|4461

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein uL3

Chain LR

60S ribosomal protein uL13

Chain LY

60S ribosomal protein L23