J4_7ZOD_002

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZOD_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0556

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7ZOD|1|b|G|297
7ZOD|1|b|G|298
7ZOD|1|b|A|299
7ZOD|1|b|A|300
7ZOD|1|b|G|301
*
7ZOD|1|b|C|316
7ZOD|1|b|G|317
7ZOD|1|b|C|318
7ZOD|1|b|G|319
*
7ZOD|1|b|C|323
7ZOD|1|b|A|324
7ZOD|1|b|G|325
*
7ZOD|1|b|C|337
7ZOD|1|b|G|338
7ZOD|1|b|U|339
7ZOD|1|b|A|340
7ZOD|1|b|C|341

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain u

50S ribosomal protein L24