J4_7ZOD_003
3D structure
- PDB id
- 7ZOD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- CAAG*CGAAG*CGAG*CGUUAAG
- Length
- 20 nucleotides
- Bulged bases
- 7ZOD|1|b|U|653, 7ZOD|1|b|A|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZOD_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.5165
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7ZOD|1|b|C|601
7ZOD|1|b|A|602
7ZOD|1|b|A|603
7ZOD|1|b|G|604
*
7ZOD|1|b|C|624
7ZOD|1|b|G|625
7ZOD|1|b|A|626
7ZOD|1|b|A|627
7ZOD|1|b|G|628
*
7ZOD|1|b|C|635
7ZOD|1|b|G|636
7ZOD|1|b|A|637
7ZOD|1|b|G|638
*
7ZOD|1|b|C|650
7ZOD|1|b|G|651
7ZOD|1|b|U|652
7ZOD|1|b|U|653
7ZOD|1|b|A|654
7ZOD|1|b|A|655
7ZOD|1|b|G|656
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 7
- 50S ribosomal protein L35
- Chain e
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
Coloring options: