J4_7ZOD_005

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7ZOD|1|b|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZOD_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.067

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ZOD|1|b|G|1310
7ZOD|1|b|G|1311
7ZOD|1|b|U|1312
7ZOD|1|b|U|1313
7ZOD|1|b|C|1314
*
7ZOD|1|b|G|1338
7ZOD|1|b|G|1339
7ZOD|1|b|U|1340
7ZOD|1|b|G|1341
7ZOD|1|b|A|1342
7ZOD|1|b|G|1343
*
7ZOD|1|b|C|1404
7ZOD|1|b|U|1405
*
7ZOD|1|b|A|1597
7ZOD|1|b|A|1598
7ZOD|1|b|U|1599
7ZOD|1|b|C|1600
7ZOD|1|b|G|1601
7ZOD|1|b|U|1602
7ZOD|1|b|A|1603
7ZOD|1|b|C|1604

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain t

50S ribosomal protein L23