J4_7ZS5_005
3D structure
- PDB id
- 7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GG*CU*AG*UC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZS5_005 not in the Motif Atlas
- Homologous match to J4_8P9A_016
- Geometric discrepancy: 0.1098
- The information below is about J4_8P9A_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_24280.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7ZS5|1|1|G|1674
7ZS5|1|1|G|1675
*
7ZS5|1|1|C|1693
7ZS5|1|1|U|1694
*
7ZS5|1|1|A|1752
7ZS5|1|1|G|1753
*
7ZS5|1|1|U|1772
7ZS5|1|1|C|1773
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain BV
- 60S ribosomal protein L22-A
- Chain Bh
- 60S ribosomal protein L34-A
- Chain Bl
- 60S ribosomal protein L38
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