3D structure

PDB id
7ZUX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Collided ribosome in a disome unit from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
CAAAUAU*AG*UGAU*AG
Length
15 nucleotides
Bulged bases
7ZUX|1|5|A|1453, 7ZUX|1|5|U|1456, 7ZUX|1|5|A|1457
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7ZUX_005 not in the Motif Atlas
Homologous match to J4_8P9A_014
Geometric discrepancy: 0.0777
The information below is about J4_8P9A_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_87855.1
Basepair signature
cWW-F-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

7ZUX|1|5|C|1452
7ZUX|1|5|A|1453
7ZUX|1|5|A|1454
7ZUX|1|5|A|1455
7ZUX|1|5|U|1456
7ZUX|1|5|A|1457
7ZUX|1|5|U|1458
*
7ZUX|1|5|A|1476
7ZUX|1|5|G|1477
*
7ZUX|1|5|U|1878
7ZUX|1|5|G|1879
7ZUX|1|5|A|1880
7ZUX|1|5|U|1881
*
7ZUX|1|5|A|2353
7ZUX|1|5|G|2354

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain EO
60S ribosomal protein L17-A
Chain EQ
60S ribosomal protein L19-A
Chain Ec
60S ribosomal protein L31-A

Coloring options:


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