J4_7ZW0_007

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZW0_007 not in the Motif Atlas

Homologous match to J4_8P9A_016

Geometric discrepancy: 0.0707

The information below is about J4_8P9A_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ZW0|1|LA|G|1674
7ZW0|1|LA|G|1675
*
7ZW0|1|LA|C|1693
7ZW0|1|LA|U|1694
*
7ZW0|1|LA|A|1752
7ZW0|1|LA|G|1753
*
7ZW0|1|LA|U|1772
7ZW0|1|LA|C|1773

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LX

60S ribosomal protein L22-A

Chain Lj

60S ribosomal protein L34-A

Chain Ln

60S ribosomal protein L38