J4_7ZW0_012

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGG*CGC*GAGGUCU*AC

Length

16 nucleotides

Bulged bases

7ZW0|1|sl|U|8, 7ZW0|1|sl|U|47, 7ZW0|1|sl|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZW0_012 not in the Motif Atlas

Homologous match to J4_8VU0_001

Geometric discrepancy: 0.2356

The information below is about J4_8VU0_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_58311.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

30

Unit IDs

7ZW0|1|sl|G|7
7ZW0|1|sl|U|8
7ZW0|1|sl|G|9
7ZW0|1|sl|G|10
*
7ZW0|1|sl|C|25
7ZW0|1|sl|G|26
7ZW0|1|sl|C|27
*
7ZW0|1|sl|G|43
7ZW0|1|sl|A|44
7ZW0|1|sl|G|45
7ZW0|1|sl|G|46
7ZW0|1|sl|U|47
7ZW0|1|sl|C|48
7ZW0|1|sl|U|49
*
7ZW0|1|sl|A|65
7ZW0|1|sl|C|66

Current chains

Chain sl

tRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

Large subunit ribosomal RNA; LSU rRNA

Chain LM

60S ribosomal protein L10