J4_8A3D_003

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

8A3D|1|A|G|1271, 8A3D|1|A|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A3D|1|A|C|981
8A3D|1|A|U|982
8A3D|1|A|C|983
*
8A3D|1|A|G|1070
8A3D|1|A|C|1071
8A3D|1|A|C|1072
*
8A3D|1|A|G|1240
8A3D|1|A|C|1241
8A3D|1|A|G|1242
8A3D|1|A|C|1243
*
8A3D|1|A|G|1268
8A3D|1|A|G|1269
8A3D|1|A|A|1270
8A3D|1|A|G|1271
8A3D|1|A|C|1272
8A3D|1|A|G|1273

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L6

Chain V

60S ribosomal protein L29

Chain m

60S ribosomal protein L7