J4_8A3D_005
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8A3D|1|A|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8A3D|1|A|G|2406
8A3D|1|A|G|2407
8A3D|1|A|U|2408
8A3D|1|A|U|2409
8A3D|1|A|C|2410
*
8A3D|1|A|G|2434
8A3D|1|A|G|2435
8A3D|1|A|U|2436
8A3D|1|A|C|2437
8A3D|1|A|A|2438
8A3D|1|A|G|2439
*
8A3D|1|A|U|2538
8A3D|1|A|C|2539
*
8A3D|1|A|G|2777
8A3D|1|A|G|2778
8A3D|1|A|C|2779
8A3D|1|A|C|2780
8A3D|1|A|G|2781
8A3D|1|A|U|2782
8A3D|1|A|A|2783
8A3D|1|A|C|2784
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L
- 60S ribosomal protein L19
- Chain R
- 60S ribosomal protein L23a
- Chain a
- 60S ribosomal protein L34
- Chain b
- Ribosomal protein uL29
- Chain d
- 60S ribosomal protein L37
- Chain e
- 60S ribosomal protein L38
- Chain f
- 60S ribosomal protein L39
Coloring options: