J4_8A3D_007

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8A3D|1|A|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A3D|1|A|G|2618
8A3D|1|A|G|2619
*
8A3D|1|A|U|2637
8A3D|1|A|G|2638
8A3D|1|A|U|2639
8A3D|1|A|G|2640
8A3D|1|A|A|2641
8A3D|1|A|A|2642
*
8A3D|1|A|U|2692
8A3D|1|A|G|2693
8A3D|1|A|G|2694
8A3D|1|A|A|2695
8A3D|1|A|A|2696
8A3D|1|A|A|2697
8A3D|1|A|G|2698
*
8A3D|1|A|U|2718
8A3D|1|A|C|2719

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L19

Chain O

60S ribosomal protein L22

Chain a

60S ribosomal protein L34

Chain e

60S ribosomal protein L38