J4_8A3D_010

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

8A3D|1|A|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A3D|1|A|C|4231
8A3D|1|A|U|4232
8A3D|1|A|A|4233
8A3D|1|A|A|4234
8A3D|1|A|G|4235
*
8A3D|1|A|U|4289
8A3D|1|A|U|4290
8A3D|1|A|G|4291
*
8A3D|1|A|C|4318
8A3D|1|A|C|4319
*
8A3D|1|A|G|4328
8A3D|1|A|G|4329
8A3D|1|A|G|4330

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L5

Chain N

60S ribosomal protein L21

Chain i

60S ribosomal protein L36a