J4_8A3L_005
3D structure
- PDB id
- 8A3L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into the binding of bS1 to the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8A3L|1|W|U|8, 8A3L|1|W|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8A3L_005 not in the Motif Atlas
- Homologous match to J4_5E81_027
- Geometric discrepancy: 0.3171
- The information below is about J4_5E81_027
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8A3L|1|W|G|7
8A3L|1|W|U|8
8A3L|1|W|G|9
8A3L|1|W|G|10
*
8A3L|1|W|C|26
8A3L|1|W|G|27
8A3L|1|W|U|28
*
8A3L|1|W|A|44
8A3L|1|W|A|45
8A3L|1|W|G|46
8A3L|1|W|G|47
8A3L|1|W|U|48
8A3L|1|W|C|49
8A3L|1|W|G|50
*
8A3L|1|W|C|66
8A3L|1|W|C|67
Current chains
- Chain W
- E-site tRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain G
- 30S ribosomal protein S7
Coloring options: