J4_8A3L_009

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8A3L|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8A3L_009 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0817

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8A3L|1|a|G|1310
8A3L|1|a|G|1311
8A3L|1|a|U|1312
8A3L|1|a|U|1313
8A3L|1|a|C|1314
*
8A3L|1|a|G|1338
8A3L|1|a|G|1339
8A3L|1|a|U|1340
8A3L|1|a|G|1341
8A3L|1|a|A|1342
8A3L|1|a|G|1343
*
8A3L|1|a|C|1404
8A3L|1|a|U|1405
*
8A3L|1|a|A|1597
8A3L|1|a|A|1598
8A3L|1|a|U|1599
8A3L|1|a|C|1600
8A3L|1|a|G|1601
8A3L|1|a|U|1602
8A3L|1|a|A|1603
8A3L|1|a|C|1604

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23