J4_8A57_002

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAAG*CGCC*GAC*GGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8A57_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1183

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

8A57|1|A|U|339
8A57|1|A|G|340
8A57|1|A|A|341
8A57|1|A|A|342
8A57|1|A|G|343
*
8A57|1|A|C|359
8A57|1|A|G|360
8A57|1|A|C|361
8A57|1|A|C|362
*
8A57|1|A|G|366
8A57|1|A|A|367
8A57|1|A|C|368
*
8A57|1|A|G|380
8A57|1|A|G|381
8A57|1|A|U|382
8A57|1|A|A|383
8A57|1|A|G|384

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain X

50S ribosomal protein L24