J4_8AGV_010

3D structure

PDB id

8AGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state H

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUGG*CGCU*AGAGGUCU*AC

Length

18 nucleotides

Bulged bases

8AGV|1|x|U|47, 8AGV|1|x|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8AGV_010 not in the Motif Atlas

Homologous match to J4_4RDX_001

Geometric discrepancy: 0.3218

The information below is about J4_4RDX_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AGV|1|x|G|7
8AGV|1|x|U|8
8AGV|1|x|G|9
8AGV|1|x|G|10
*
8AGV|1|x|C|25
8AGV|1|x|G|26
8AGV|1|x|C|27
8AGV|1|x|U|28
*
8AGV|1|x|A|42
8AGV|1|x|G|43
8AGV|1|x|A|44
8AGV|1|x|G|45
8AGV|1|x|G|46
8AGV|1|x|U|47
8AGV|1|x|C|48
8AGV|1|x|U|49
*
8AGV|1|x|A|65
8AGV|1|x|C|66

Current chains

Chain x

Ala tRNA

Nearby chains

Chain a

RQC2 isoform 1