J4_8AGW_007

3D structure

PDB id

8AGW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state D

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8AGW|1|f|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8AGW_007 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.1469

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8AGW|1|f|C|2192
8AGW|1|f|U|2193
8AGW|1|f|G|2194
*
8AGW|1|f|C|2248
8AGW|1|f|G|2249
*
8AGW|1|f|C|2267
8AGW|1|f|U|2268
8AGW|1|f|U|2269
8AGW|1|f|A|2270
8AGW|1|f|A|2271
8AGW|1|f|G|2272
8AGW|1|f|G|2273
8AGW|1|f|U|2274
8AGW|1|f|A|2275
8AGW|1|f|G|2276
*
8AGW|1|f|U|2310
8AGW|1|f|G|2311
8AGW|1|f|A|2312
8AGW|1|f|A|2313
8AGW|1|f|U|2314
8AGW|1|f|G|2315

Current chains

Chain f

25S rRNA

Nearby chains

Chain j

60S ribosomal protein L2-A