J4_8AGZ_006
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8AGZ_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0533
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8AGZ|1|f|G|2130
8AGZ|1|f|A|2131
8AGZ|1|f|C|2132
8AGZ|1|f|U|2133
8AGZ|1|f|G|2134
*
8AGZ|1|f|C|2146
8AGZ|1|f|A|2147
8AGZ|1|f|U|2148
8AGZ|1|f|A|2149
8AGZ|1|f|G|2150
*
8AGZ|1|f|U|2186
8AGZ|1|f|G|2187
8AGZ|1|f|A|2188
8AGZ|1|f|U|2189
8AGZ|1|f|U|2190
*
8AGZ|1|f|A|2317
8AGZ|1|f|U|2318
8AGZ|1|f|U|2319
8AGZ|1|f|A|2320
8AGZ|1|f|A|2321
8AGZ|1|f|C|2322
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain c
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-A
Coloring options: