J4_8AGZ_007
3D structure
- PDB id
- 8AGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8AGZ|1|f|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8AGZ_007 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1635
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8AGZ|1|f|C|2192
8AGZ|1|f|U|2193
8AGZ|1|f|G|2194
*
8AGZ|1|f|C|2248
8AGZ|1|f|G|2249
*
8AGZ|1|f|C|2267
8AGZ|1|f|U|2268
8AGZ|1|f|U|2269
8AGZ|1|f|A|2270
8AGZ|1|f|A|2271
8AGZ|1|f|G|2272
8AGZ|1|f|G|2273
8AGZ|1|f|U|2274
8AGZ|1|f|A|2275
8AGZ|1|f|G|2276
*
8AGZ|1|f|U|2310
8AGZ|1|f|G|2311
8AGZ|1|f|A|2312
8AGZ|1|f|A|2313
8AGZ|1|f|U|2314
8AGZ|1|f|G|2315
Current chains
- Chain f
- 25S rRNA
Nearby chains
- Chain a
- RQC2 isoform 1
- Chain j
- 60S ribosomal protein L2-A
- Chain v
- Eukaryotic translation initiation factor 5A-1
- Chain y
- Transfer RNA; tRNA
Coloring options: