J4_8AKN_003
3D structure
- PDB id
- 8AKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8AKN|1|B|C|576, 8AKN|1|B|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8AKN_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0536
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8AKN|1|B|G|575
8AKN|1|B|C|576
8AKN|1|B|G|577
*
8AKN|1|B|C|764
8AKN|1|B|G|765
8AKN|1|B|A|766
8AKN|1|B|A|767
8AKN|1|B|A|768
8AKN|1|B|G|769
*
8AKN|1|B|C|810
8AKN|1|B|C|811
8AKN|1|B|G|812
8AKN|1|B|U|813
8AKN|1|B|A|814
8AKN|1|B|A|815
8AKN|1|B|A|816
8AKN|1|B|C|817
8AKN|1|B|G|818
8AKN|1|B|A|819
8AKN|1|B|U|820
8AKN|1|B|G|821
*
8AKN|1|B|C|879
8AKN|1|B|C|880
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain I
- 30S ribosomal protein S8
- Chain M
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S15
- Chain R
- 30S ribosomal protein S17
- Chain V
- 30S ribosomal protein S21
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: