J4_8AKN_004
3D structure
- PDB id
- 8AKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 8AKN|1|X|U|8, 8AKN|1|X|U|47, 8AKN|1|X|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8AKN_004 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.164
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8AKN|1|X|A|7
8AKN|1|X|U|8
8AKN|1|X|A|9
8AKN|1|X|G|10
*
8AKN|1|X|C|25
8AKN|1|X|A|26
8AKN|1|X|G|27
*
8AKN|1|X|C|43
8AKN|1|X|G|44
8AKN|1|X|U|45
8AKN|1|X|G|46
8AKN|1|X|U|47
8AKN|1|X|C|48
8AKN|1|X|C|49
*
8AKN|1|X|G|65
8AKN|1|X|U|66
Current chains
- Chain X
- Phenylalanine-tRNA
Nearby chains
- Chain B
- Small subunit ribosomal RNA; SSU rRNA
- Chain N
- 30S ribosomal protein S13
- Chain W
- Peptide chain release factor RF1
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 50S ribosomal protein L16
Coloring options: