3D structure

PDB id
8AKN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8AKN_006 not in the Motif Atlas
Homologous match to J4_5J7L_019
Geometric discrepancy: 0.0461
The information below is about J4_5J7L_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

8AKN|1|a|G|297
8AKN|1|a|G|298
8AKN|1|a|A|299
8AKN|1|a|A|300
8AKN|1|a|G|301
*
8AKN|1|a|C|316
8AKN|1|a|G|317
8AKN|1|a|C|318
8AKN|1|a|G|319
*
8AKN|1|a|C|323
8AKN|1|a|A|324
8AKN|1|a|G|325
*
8AKN|1|a|C|337
8AKN|1|a|G|338
8AKN|1|a|U|339
8AKN|1|a|A|340
8AKN|1|a|C|341

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain e
50S ribosomal protein L4
Chain t
50S ribosomal protein L24

Coloring options:


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