J4_8AKN_009

3D structure

PDB id

8AKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8AKN|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8AKN_009 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0461

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8AKN|1|a|G|1310
8AKN|1|a|G|1311
8AKN|1|a|U|1312
8AKN|1|a|U|1313
8AKN|1|a|C|1314
*
8AKN|1|a|G|1338
8AKN|1|a|G|1339
8AKN|1|a|U|1340
8AKN|1|a|G|1341
8AKN|1|a|A|1342
8AKN|1|a|G|1343
*
8AKN|1|a|C|1404
8AKN|1|a|U|1405
*
8AKN|1|a|A|1597
8AKN|1|a|A|1598
8AKN|1|a|U|1599
8AKN|1|a|C|1600
8AKN|1|a|G|1601
8AKN|1|a|U|1602
8AKN|1|a|A|1603
8AKN|1|a|C|1604

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23