J4_8AM9_002

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*CAUAACG*CCAAAGA*UUGC

Length

21 nucleotides

Bulged bases

8AM9|1|B|C|183, 8AM9|1|B|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8AM9|1|B|G|142
8AM9|1|B|A|143
8AM9|1|B|G|144
*
8AM9|1|B|C|178
8AM9|1|B|A|179
8AM9|1|B|U|180
8AM9|1|B|A|181
8AM9|1|B|A|182
8AM9|1|B|C|183
8AM9|1|B|G|184
*
8AM9|1|B|C|193
8AM9|1|B|C|194
8AM9|1|B|A|195
8AM9|1|B|A|196
8AM9|1|B|A|197
8AM9|1|B|G|198
8AM9|1|B|A|199
*
8AM9|1|B|U|218
8AM9|1|B|U|219
8AM9|1|B|G|220
8AM9|1|B|C|221

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S20