J4_8AM9_009

3D structure

PDB id

8AM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8AM9|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8AM9_009 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0537

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8AM9|1|a|G|1310
8AM9|1|a|G|1311
8AM9|1|a|U|1312
8AM9|1|a|U|1313
8AM9|1|a|C|1314
*
8AM9|1|a|G|1338
8AM9|1|a|G|1339
8AM9|1|a|U|1340
8AM9|1|a|G|1341
8AM9|1|a|A|1342
8AM9|1|a|G|1343
*
8AM9|1|a|C|1404
8AM9|1|a|U|1405
*
8AM9|1|a|A|1597
8AM9|1|a|A|1598
8AM9|1|a|U|1599
8AM9|1|a|C|1600
8AM9|1|a|G|1601
8AM9|1|a|U|1602
8AM9|1|a|A|1603
8AM9|1|a|C|1604

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23