J4_8AM9_013
3D structure
- PDB id
- 8AM9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the elongating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CU(2MG)*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8AM9|1|a|U|1971
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8AM9_013 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1038
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
8AM9|1|a|C|1833
8AM9|1|a|U|1834
8AM9|1|a|2MG|1835
*
8AM9|1|a|C|1905
8AM9|1|a|G|1906
*
8AM9|1|a|C|1924
8AM9|1|a|C|1925
8AM9|1|a|U|1926
8AM9|1|a|A|1927
8AM9|1|a|A|1928
8AM9|1|a|G|1929
8AM9|1|a|G|1930
8AM9|1|a|U|1931
8AM9|1|a|A|1932
8AM9|1|a|G|1933
*
8AM9|1|a|C|1967
8AM9|1|a|G|1968
8AM9|1|a|A|1969
8AM9|1|a|A|1970
8AM9|1|a|U|1971
8AM9|1|a|G|1972
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain B
- Small subunit ribosomal RNA; SSU rRNA
- Chain Y
- Transfer RNA; tRNA
- Chain c
- 50S ribosomal protein L2
Coloring options: