J4_8AP4_001

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

8AP4|1|Z|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8AP4_001 not in the Motif Atlas

Homologous match to J4_7VNV_001

Geometric discrepancy: 0.1987

The information below is about J4_7VNV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8AP4|1|Z|G|7
8AP4|1|Z|U|8
8AP4|1|Z|G|9
8AP4|1|Z|G|10
*
8AP4|1|Z|C|25
8AP4|1|Z|G|26
8AP4|1|Z|U|27
*
8AP4|1|Z|A|43
8AP4|1|Z|A|44
8AP4|1|Z|G|45
8AP4|1|Z|G|46
8AP4|1|Z|U|47
8AP4|1|Z|C|48
8AP4|1|Z|G|49
*
8AP4|1|Z|C|65
8AP4|1|Z|C|66

Current chains

Chain Z

P-tRNA

Nearby chains

Chain A

Heat shock protein 15

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain l

50S ribosomal protein L16