J4_8AP4_006

3D structure

PDB id

8AP4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherischia coli heat shock protein Hsp15 in complex with ribosomal 50S subunits bearing peptidyl-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8AP4|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8AP4_006 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0758

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8AP4|1|a|G|1310
8AP4|1|a|G|1311
8AP4|1|a|U|1312
8AP4|1|a|U|1313
8AP4|1|a|C|1314
*
8AP4|1|a|G|1338
8AP4|1|a|G|1339
8AP4|1|a|U|1340
8AP4|1|a|G|1341
8AP4|1|a|A|1342
8AP4|1|a|G|1343
*
8AP4|1|a|C|1404
8AP4|1|a|U|1405
*
8AP4|1|a|A|1597
8AP4|1|a|A|1598
8AP4|1|a|U|1599
8AP4|1|a|C|1600
8AP4|1|a|G|1601
8AP4|1|a|U|1602
8AP4|1|a|A|1603
8AP4|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23