J4_8AYE_006

3D structure

PDB id

8AYE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to thermorubin and fMet-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.96 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8AYE_006 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0421

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8AYE|1|a|G|297
8AYE|1|a|G|298
8AYE|1|a|A|299
8AYE|1|a|A|300
8AYE|1|a|G|301
*
8AYE|1|a|C|316
8AYE|1|a|G|317
8AYE|1|a|C|318
8AYE|1|a|G|319
*
8AYE|1|a|C|323
8AYE|1|a|A|324
8AYE|1|a|G|325
*
8AYE|1|a|C|337
8AYE|1|a|G|338
8AYE|1|a|U|339
8AYE|1|a|A|340
8AYE|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24