J4_8B6C_005
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- (OMC)AAAUAU*AGG*CAUGUU*AG
- Length
- 18 nucleotides
- Bulged bases
- 8B6C|1|5|A|2209, 8B6C|1|5|U|2212, 8B6C|1|5|U|2671
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B6C|1|5|OMC|2208
8B6C|1|5|A|2209
8B6C|1|5|A|2210
8B6C|1|5|A|2211
8B6C|1|5|U|2212
8B6C|1|5|A|2213
8B6C|1|5|U|2214
*
8B6C|1|5|A|2232
8B6C|1|5|G|2233
8B6C|1|5|G|2234
*
8B6C|1|5|C|2667
8B6C|1|5|A|2668
8B6C|1|5|U|2669
8B6C|1|5|G|2670
8B6C|1|5|U|2671
8B6C|1|5|U|2672
*
8B6C|1|5|A|3588
8B6C|1|5|G|3589
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain P
- 60S ribosomal protein L17
- Chain R
- 60S ribosomal protein L19
- Chain d
- 60S ribosomal protein L31
Coloring options: