J4_8B6C_007

3D structure

PDB id

8B6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8B6C|1|5|A|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B6C|1|5|G|2461
8B6C|1|5|G|2462
*
8B6C|1|5|U|2480
8B6C|1|5|G|2481
8B6C|1|5|U|2482
8B6C|1|5|G|2483
8B6C|1|5|A|2484
8B6C|1|5|A|2485
*
8B6C|1|5|U|2535
8B6C|1|5|G|2536
8B6C|1|5|G|2537
8B6C|1|5|A|2538
8B6C|1|5|A|2539
8B6C|1|5|A|2540
8B6C|1|5|G|2541
*
8B6C|1|5|U|2561
8B6C|1|5|C|2562

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain U

60S ribosomal protein L22 (Fragment)

Chain g

60S ribosomal protein L34

Chain k

60S ribosomal protein L38