J4_8B6C_009
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8B6C|1|5|U|3505, 8B6C|1|5|U|3550
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8B6C_009 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1442
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
8B6C|1|5|C|3428
8B6C|1|5|U|3429
8B6C|1|5|G|3430
*
8B6C|1|5|C|3484
8B6C|1|5|G|3485
*
8B6C|1|5|C|3503
8B6C|1|5|U|3504
8B6C|1|5|U|3505
8B6C|1|5|A|3506
8B6C|1|5|A|3507
8B6C|1|5|G|3508
8B6C|1|5|G|3509
8B6C|1|5|U|3510
8B6C|1|5|A|3511
8B6C|1|5|G|3512
*
8B6C|1|5|U|3546
8B6C|1|5|G|3547
8B6C|1|5|A|3548
8B6C|1|5|A|3549
8B6C|1|5|U|3550
8B6C|1|5|G|3551
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain n
- 60S ribosomal protein L41
Coloring options: