J4_8B7Y_003
3D structure
- PDB id
- 8B7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8B7Y|1|C|C|576, 8B7Y|1|C|A|815, 8B7Y|1|C|C|817, 8B7Y|1|C|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8B7Y_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0732
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8B7Y|1|C|G|575
8B7Y|1|C|C|576
8B7Y|1|C|G|577
*
8B7Y|1|C|C|764
8B7Y|1|C|G|765
8B7Y|1|C|A|766
8B7Y|1|C|A|767
8B7Y|1|C|A|768
8B7Y|1|C|G|769
*
8B7Y|1|C|C|810
8B7Y|1|C|C|811
8B7Y|1|C|G|812
8B7Y|1|C|U|813
8B7Y|1|C|A|814
8B7Y|1|C|A|815
8B7Y|1|C|A|816
8B7Y|1|C|C|817
8B7Y|1|C|G|818
8B7Y|1|C|A|819
8B7Y|1|C|U|820
8B7Y|1|C|G|821
*
8B7Y|1|C|C|879
8B7Y|1|C|C|880
Current chains
- Chain C
- 16S ribosomal RNA
Nearby chains
- Chain 5
- 30S ribosomal protein S21
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 30S ribosomal protein S8
- Chain p
- 30S ribosomal protein S11
- Chain q
- 30S ribosomal protein S12
- Chain t
- 30S ribosomal protein S15
- Chain v
- 30S ribosomal protein S17
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