J4_8B7Y_008

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8B7Y|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8B7Y_008 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0689

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8B7Y|1|I|G|1310
8B7Y|1|I|G|1311
8B7Y|1|I|U|1312
8B7Y|1|I|U|1313
8B7Y|1|I|C|1314
*
8B7Y|1|I|G|1338
8B7Y|1|I|G|1339
8B7Y|1|I|U|1340
8B7Y|1|I|G|1341
8B7Y|1|I|A|1342
8B7Y|1|I|G|1343
*
8B7Y|1|I|C|1404
8B7Y|1|I|U|1405
*
8B7Y|1|I|A|1597
8B7Y|1|I|A|1598
8B7Y|1|I|U|1599
8B7Y|1|I|C|1600
8B7Y|1|I|G|1601
8B7Y|1|I|U|1602
8B7Y|1|I|A|1603
8B7Y|1|I|C|1604

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L23

Chain k

50S ribosomal protein L34