J4_8B7Y_012

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8B7Y|1|I|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8B7Y_012 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0999

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8B7Y|1|I|C|1833
8B7Y|1|I|U|1834
8B7Y|1|I|2MG|1835
*
8B7Y|1|I|C|1905
8B7Y|1|I|G|1906
*
8B7Y|1|I|C|1924
8B7Y|1|I|C|1925
8B7Y|1|I|U|1926
8B7Y|1|I|A|1927
8B7Y|1|I|A|1928
8B7Y|1|I|G|1929
8B7Y|1|I|G|1930
8B7Y|1|I|U|1931
8B7Y|1|I|A|1932
8B7Y|1|I|G|1933
*
8B7Y|1|I|C|1967
8B7Y|1|I|G|1968
8B7Y|1|I|A|1969
8B7Y|1|I|A|1970
8B7Y|1|I|U|1971
8B7Y|1|I|G|1972

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

Small subunit ribosomal RNA; SSU rRNA

Chain K

50S ribosomal protein L2

Chain n

Transfer RNA; tRNA