J4_8B7Y_015
3D structure
- PDB id
- 8B7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8B7Y|1|n|U|8, 8B7Y|1|n|U|48, 8B7Y|1|n|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8B7Y_015 not in the Motif Atlas
- Homologous match to J4_6CFJ_015
- Geometric discrepancy: 0.2262
- The information below is about J4_6CFJ_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
8B7Y|1|n|G|7
8B7Y|1|n|U|8
8B7Y|1|n|G|9
8B7Y|1|n|G|10
*
8B7Y|1|n|C|26
8B7Y|1|n|G|27
8B7Y|1|n|U|28
*
8B7Y|1|n|A|44
8B7Y|1|n|A|45
8B7Y|1|n|G|46
8B7Y|1|n|G|47
8B7Y|1|n|U|48
8B7Y|1|n|C|49
8B7Y|1|n|G|50
*
8B7Y|1|n|C|66
8B7Y|1|n|C|67
Current chains
- Chain n
- P-tRNA fMet
Nearby chains
- Chain C
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
- Chain U
- 50S ribosomal protein L16
- Chain r
- 30S ribosomal protein S13
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