J4_8BF7_002

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BF7_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1244

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8BF7|1|0|G|297
8BF7|1|0|G|298
8BF7|1|0|A|299
8BF7|1|0|A|300
8BF7|1|0|G|301
*
8BF7|1|0|C|316
8BF7|1|0|G|317
8BF7|1|0|C|318
8BF7|1|0|G|319
*
8BF7|1|0|C|323
8BF7|1|0|A|324
8BF7|1|0|G|325
*
8BF7|1|0|C|337
8BF7|1|0|G|338
8BF7|1|0|U|339
8BF7|1|0|A|340
8BF7|1|0|C|341

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24