J4_8BF7_003

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

8BF7|1|0|U|653, 8BF7|1|0|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BF7_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.2297

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

8BF7|1|0|C|601
8BF7|1|0|A|602
8BF7|1|0|A|603
8BF7|1|0|G|604
*
8BF7|1|0|C|624
8BF7|1|0|G|625
8BF7|1|0|A|626
8BF7|1|0|A|627
8BF7|1|0|G|628
*
8BF7|1|0|C|635
8BF7|1|0|G|636
8BF7|1|0|A|637
8BF7|1|0|G|638
*
8BF7|1|0|C|650
8BF7|1|0|G|651
8BF7|1|0|U|652
8BF7|1|0|U|653
8BF7|1|0|A|654
8BF7|1|0|A|655
8BF7|1|0|G|656

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain d

50S ribosomal protein L35