J4_8BF7_005

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8BF7|1|0|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BF7_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1386

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BF7|1|0|G|1310
8BF7|1|0|G|1311
8BF7|1|0|U|1312
8BF7|1|0|U|1313
8BF7|1|0|C|1314
*
8BF7|1|0|G|1338
8BF7|1|0|G|1339
8BF7|1|0|U|1340
8BF7|1|0|G|1341
8BF7|1|0|A|1342
8BF7|1|0|G|1343
*
8BF7|1|0|C|1404
8BF7|1|0|U|1405
*
8BF7|1|0|A|1597
8BF7|1|0|A|1598
8BF7|1|0|U|1599
8BF7|1|0|C|1600
8BF7|1|0|G|1601
8BF7|1|0|U|1602
8BF7|1|0|A|1603
8BF7|1|0|C|1604

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain Q

50S ribosomal protein L23

Chain c

50S ribosomal protein L34