J4_8BF7_009

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8BF7|1|0|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BF7_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1656

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8BF7|1|0|C|1833
8BF7|1|0|U|1834
8BF7|1|0|G|1835
*
8BF7|1|0|C|1905
8BF7|1|0|G|1906
*
8BF7|1|0|C|1924
8BF7|1|0|C|1925
8BF7|1|0|U|1926
8BF7|1|0|A|1927
8BF7|1|0|A|1928
8BF7|1|0|G|1929
8BF7|1|0|G|1930
8BF7|1|0|U|1931
8BF7|1|0|A|1932
8BF7|1|0|G|1933
*
8BF7|1|0|C|1967
8BF7|1|0|G|1968
8BF7|1|0|A|1969
8BF7|1|0|A|1970
8BF7|1|0|U|1971
8BF7|1|0|G|1972

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 4

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2