J4_8BF7_014

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGUAAAGCG*CGAAAG*CCGUAAACGAUG*CCG

Length

30 nucleotides

Bulged bases

8BF7|1|2|A|572, 8BF7|1|2|C|576, 8BF7|1|2|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BF7|1|2|C|569
8BF7|1|2|G|570
8BF7|1|2|U|571
8BF7|1|2|A|572
8BF7|1|2|A|573
8BF7|1|2|A|574
8BF7|1|2|G|575
8BF7|1|2|C|576
8BF7|1|2|G|577
*
8BF7|1|2|C|764
8BF7|1|2|G|765
8BF7|1|2|A|766
8BF7|1|2|A|767
8BF7|1|2|A|768
8BF7|1|2|G|769
*
8BF7|1|2|C|810
8BF7|1|2|C|811
8BF7|1|2|G|812
8BF7|1|2|U|813
8BF7|1|2|A|814
8BF7|1|2|A|815
8BF7|1|2|A|816
8BF7|1|2|C|817
8BF7|1|2|G|818
8BF7|1|2|A|819
8BF7|1|2|U|820
8BF7|1|2|G|821
*
8BF7|1|2|C|879
8BF7|1|2|C|880
8BF7|1|2|G|881

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain l

30S ribosomal protein S8

Chain p

30S ribosomal protein S12

Chain s

30S ribosomal protein S15

Chain u

30S ribosomal protein S17