J4_8BGE_002

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BGE_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1174

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8BGE|1|0|G|297
8BGE|1|0|G|298
8BGE|1|0|A|299
8BGE|1|0|A|300
8BGE|1|0|G|301
*
8BGE|1|0|C|316
8BGE|1|0|G|317
8BGE|1|0|C|318
8BGE|1|0|G|319
*
8BGE|1|0|C|323
8BGE|1|0|A|324
8BGE|1|0|G|325
*
8BGE|1|0|C|337
8BGE|1|0|G|338
8BGE|1|0|U|339
8BGE|1|0|A|340
8BGE|1|0|C|341

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24