J4_8BGE_009

3D structure

PDB id

8BGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8BGE|1|0|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8BGE_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1572

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8BGE|1|0|C|1833
8BGE|1|0|U|1834
8BGE|1|0|G|1835
*
8BGE|1|0|C|1905
8BGE|1|0|G|1906
*
8BGE|1|0|C|1924
8BGE|1|0|C|1925
8BGE|1|0|U|1926
8BGE|1|0|A|1927
8BGE|1|0|A|1928
8BGE|1|0|G|1929
8BGE|1|0|G|1930
8BGE|1|0|U|1931
8BGE|1|0|A|1932
8BGE|1|0|G|1933
*
8BGE|1|0|C|1967
8BGE|1|0|G|1968
8BGE|1|0|A|1969
8BGE|1|0|A|1970
8BGE|1|0|U|1971
8BGE|1|0|G|1972

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 4

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2